CER2SDF
Perl Script
Creates an SD File from the result of the CER
By TEMIS

The CER Skill Cartridge not only recognizes chemical substances. It also assigns the respective chemical structure. Chemists exchange structure often in a file known as SD File. This script allows creating such an SD File directly from results of the CER. In order to use it call idexmlclient.bat -c CER -t -o sample.txt resultDirectory on your sample.txt file (containing chemical names, etc) and then translate the output with perl cer2sdf.pl resultDirectorysample.tmx sample.sdf and then inspect the resulting SD File with your favorite SD File browser (cf. bioclipse)

CAVEAT: No Temis Product, provided as is! No warranty, no support.

 

Enjoy, Stefan

Script
Bio / Medical Chemistry Agronomics
Language(s): FR , EN , DE
Compatibility: Luxid® 6.0 , Luxid® 5.2 , Luxid® 5.1 , Luxid® 5.0 , Luxid® 6.1
Posting date: January 2013
Version: 1.0
Business model: Community